Heat 2 tbsp olive oil over medium heat in a large saute pan.
Add garlic and shallot and cook, stirring often, until onions are soft and translucent, about 2 minutes.
Add salt, pepper, sage and thyme and cook for another minute.
Add ground turkey and break it up into small pieces as it cooks, stirring often until the turkey is cooked through but not yet brown, about 10 minutes.
Stir in prepared wild rice until it is distributed evenly throughout.
Carefully spoon about ¼ cup of the turkey filling into each apple, filling each one all the way to the top.
Place muffin tin into preheated oven for about 50 minutes, until apples are soft but not wrinkled or brown.